N3DS touchscreen doesn't work with DSTwo when playing DS roms.

I've got a white regular New 3DS on 9.0E and as opposed to my o3DS the touchscreen stops being calibrated as soon as I launch a DS game with DSTwo. Touchscreen works right up until I boot a game and then every point on the screen touches [X,Y] = [1,1]

What gives and how do I fix it? I wanna play on the n3DS because it has better contrast and saturation (or something. DS games look prettier on it IMO)